Shio Kocho: Mada Mahou Nanka ni Tayotterassharu no Deshou ka?
Shadowjack: Shadowjack watches Sailor Moon
Sato Yashimi: Transistor Teaset
Nakatani Nio: Bloom Into You
Harikamo: Urara Meirochou
Nagayama Yuunon: hatsukoi*Rail trip
Miyazawa Iori: Otherside Picnic
Noda Yasuyuki: Comic Girls
Anime
Revolutionary Girl Utena (J.C.Staff, 1997)
Yami to Boushi to Hon to Tabibito (Studio Deen, 2003)
Puella Magi Madoka magica (Shaft, 2011)
Yuru Yuri (Doga Kobo, 2011)
K-On!
Kobayashi-san chi no Maidragon
Neon Genesis Evangelion
Muu
Akai Ito (Success Corporation, 2004)
Touhou Eiyashou ~ Imperishable Night (Team Shanghai Alice, 2004)
Further reading etc.
Also some other things I have come across later after this and want to keep them somewhere, because I'm a wannabe yuri scholar or something. Also might have some stuff about feminism in Japan because that's closely tied to yuri actually.